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Genetic erosion within the Fabada dry bean market class revealed by high‐throughput genotyping

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Abstract

The Fabada market class within the dry beans has a well-differentiated seed phenotype with very large white seeds. This work investigated the genetic diversity maintained in the seed collections within this market class and possible genetic erosion over the last 30 years. A panel with 100 accessions was maintained in seed collections for 30 years, 57 accessions collected from farmers in 2021, six cultivars developed in SERIDA, and 16 reference cultivars were gathered and genotyped with 108,585 SNPs using the genotyping-by-sequencing method. Filtering based on genotypic and phenotypic data was carried out in a staggered way to investigate the genetic diversity among populations. The dendrogram generated from genotyping revealed 90 lines forming 16 groups with identical SNP profiles (redundant lines) from 159 lines classified as market-class Fabada according to their passport data. Seed phenotyping indicated that 19 lines were mistakenly classified as Fabada (homonymies), which was confirmed in the dendrogram built without redundant lines. Moreover, this study provides evidence of genetic erosion between the population preserved for 30 years and the currently cultivated population. The conserved population contains 54.6% segregation sites and 41 different SNP profiles, whereas the cultivated population has 19.6% segregation sites and 26 SNP profiles. The loss of genetic variability cannot be attributed to the diffusion of modern cultivars, which increase genetic diversity (six new SNP profiles). The results allow for the more efficient preservation of plant genetic resources in genebanks, minimizing redundant accessions and incorporating new variations based on genotypic and phenotypic data.

Morphological and pathological characterization of Colletotrichum species causing anthracnose of litchi leaves in Guangxi, China

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Abstract

Litchi (Litchi chinensis Sonn.) is an evergreen subtropical fruit tree native to southern China. Litchi is vulnerable to a wide range of diseases affecting yield and fruit quality. Anthracnose is one of the main diseases during the period of growth and storage, which has a serious impact on the quality and production of litchi. In December 2020 to May 2021, typical anthracnose symptoms were observed on litchi leaves in different orchards in Qinzhou City, Guangxi Province, Southern China. According to colony features, conidial and appressorial morphology, and sequence analysis of several genomic regions (internal transcribed spacer (ITS) region, chitin synthase (chs-1), actin (act), calmodulin (cal), glyceraldehyde-3-phosphate dehydrogenase (gapdh), β-tubulin (tub2) and the intergenic region of apn2 and MAT1-2-1 (ApMat)), 44 isolates were obtained, and 26 were identified as three Colletotrichum species: C. fructicola (50%), C. siamense (42.31%), C. gigasporum (7.69%). The pathogenicity tests were performed with conidial suspension and mycelia plugs to inoculate wounded litchi seedlings. The results of pathogenicity tests showed that the virulence of C. gigasporum was the weakest, and the virulence of C. fructicola was the strongest. This is the first report of C. gigasporum causing anthracnose of litchi worldwide.

Exploring the therapeutic potential of naturally occurring piceatannol in non‐communicable diseases

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Exploring the therapeutic potential of naturally occurring piceatannol in non-communicable diseases

The natural stilbene Piceatannol is having a promising therapeutic potential for the prevention and treatment of a wide variety of complex human diseases like asthma, cancer, diabetes, and so forth.


Abstract

Piceatannol is a naturally occurring hydroxylated resveratrol analogue that can be found in a variety of fruits and vegetables. It has been documented to have a wide range of beneficial effects, including anti-inflammatory, antioxidant, anti-aging, anti-allergic, antidiabetic, neuroprotective, cardioprotective, and chemopreventive properties. Piceatannol has significantly higher antioxidant activity than resveratrol. Piceatannol has been shown in preclinical studies to have the ability to inhibit or reduce the growth of cancers in various organs such as the brain, breast, lung, colon, cervical, liver, prostate, and skin. However, the bioavailability of Piceatannol is comparatively lower than resveratrol and other stilbenes. Several approaches have been reported in recent years to enhance its bioavailability and biological activity, and clinical trials are required to validate these findings. This review focuses on several aspects of natural stilbene Piceatannol, its chemistry, and its mechanism of action, and its promising therapeutic potential for the prevention and treatment of a wide variety of complex human diseases.

Characterization and pathogenicity of Fusarium species causing sugar beet root rot in Morocco

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Abstract

The sugar beet crop ranks second globally among the plant species grown mainly for sugar production. In Morocco, the area under sugar beet farming occupies approximately 57,000 ha yielding more than 3 million tons of roots. However, sugar beet root-tip rot (RTR) caused by Fusarium spp. dramatically reduces the anticipated yields, the purity of the resulting juice, and the sugar concentration. The current study aimed at identifying and characterizing the Fusarium species responsible for the root rot in sugar beet grown in the Khenifra-Beni Mellal region of Morocco. In this survey, 69 isolates of Fusarium were sampled from sugar beet roots showing typical symptoms of root rot from 2019 to 2021. After screening based on the pathogenicity test, 28 isolates were selected and identified based on morphological features and sequence analyses of the ribosomal internal transcribed spacer (ITS) region and translation elongation factor 1 α 34 (TEF-1 α). Fusarium oxysporum was the most frequently identified species, followed closely by F. solani, F. equiseti, F. nygmai, F. brachygibbosum, F. proliferatum, F. culmorum, and F. falciforme. Six weeks after inoculations under greenhouse conditions, the studied isolates caused internal vascular discoloration and tip rot of sugar beet roots, with disease incidences ranging from 37.5% to 100.0% and a disease index between 30.3% and 70.5%. Isolates belonging to F. solani were the most aggressive. Moreover, the majority of isolates significantly reduced plant growth. To our knowledge, this research article is the first report of Fusarium species inducing RTR in sugar beet in Morocco.

Identification of Clonostachys rogersoniana as a causal agent of sisal leaf blight disease in South China

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Abstract

A novel strain of leaf blight disease affecting sisal leaves was discovered at the Hongshan farm of Yulin City, Guangxi Province, in 2022. Ten fungal isolates were identified in the infected sisal leaves and classified into six categories (22GX3-1 to 6). Pathogenicity testing revealed that only 22GX3-2 and two morphologically similar isolates induced symptoms similar to those detected in the field. Based on morphological analysis and nucleotide sequencing of the internal transcribed spacer (ITS) of the rRNA gene, translation elongation factor 1 alpha (TEF1) and tubulin beta chain 2 (TUB2) genes, the fungal isolate 22GX3-2 was identified as Clonostachys rogersoniana. To the best of our knowledge, this is the first study reporting sisal leaf blight caused by Clonostachys rogersoniana.

Powdery mildew of chayote (Sechium edule) caused by Podosphaera xanthii race 2 in Brazil

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Abstract

The causal agent of chayote (Sechium edule) powdery mildew (PM) was identified in Brazil. Microscopic examinations revealed hyaline and ovoid conidia, borne in chains and displaying distinctive extra-vacuolar fibrosin bodies. Morphology agreed to the standard description of the anamorph of Podosphaera xanthii. To confirm this identification, genomic DNA was extracted from field isolates and used in PCR assays with ITS primers. Amplicons were Sanger-sequenced and the nucleotide alignments of all isolates displayed identity levels above 97% with P. xanthii isolates in GenBank database. Phylogenetic analyses indicated only P. xanthii isolates as the PM-inducing pathogens in chayote. Inoculation assays were performed using chayote, zucchini and a set of muskmelon differential cultigens for determination of the physiological races of P. xanthii. All chayote isolates were pathogenic to chayote and zucchini seedlings. Five isolates were also pathogenic to the muskmelon cultigens ‘Hale's Best Jumbo’, ‘Védrantais’, ‘PMR-45’ and ‘Edisto 47’, whereas ‘PMR-5’ was asymptomatic during the experimental period. The virulence profile of chayote-infecting isolates allowed their classification as P. xanthii race 2. To the best of our knowledge, this is the first worldwide report of P. xanthii race 2 in chayote. This report has relevant epidemiological and disease management implications, allowing more sustainable chayote cultivation under tropical and subtropical conditions.

Effect of environmental factors, fungicide sensitivity, and pathogenicity of Fusarium spp. associated with fruit rot of melon

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Abstract

Fusarium rot is one of the main postharvest diseases of melons, directly interfering with the quality and commercial use of the fruit. The purpose of this study was to assess the effect of environmental factors (temperature, pH and salinity) and the pathogenicity of four Fusarium species (F. falciforme, F. kalimantanense, F. pernambucanum and F. sulawesiense) belonging to three different species complexes on disease development on melon, as well as the in vitro and in vivo sensitivity of these species to the fungicides azoxystrobin + fludioxonil, imazalil and thiabendazole. The results showed optimum fungal growth temperatures from 24.5 to 27.2°C, and optimum pH from 6.10 to 8.37 for all Fusarium species. NaCl concentrations (250–1000 mM) significantly reduced in vitro mycelial growth for all isolates. All species were pathogenic to melon plants and fruit, with an isolate of F. falciforme being the most aggressive, causing the highest disease severity in plants and fruit (43.3% and 62.5%, respectively). The isolate of F. sulawesiense tested showed high in vitro sensitivity to two fungicides (azoxystrobin + fludioxonil and imazalil), with EC50 values below 1 mg/L of a.i. Fruit inoculated with the selected isolates of F. falciforme and F. pernambucanum showed a reduction in the disease severity on the peduncle when treated with the fungicide thiabendazole (9.0% and 4.0%, respectively). Azoxystrobin + fludioxonil was responsible for the lowest disease severity in the epicarp caused by the same isolates (0.0% and 2.5%, respectively). These results are relevant to improve management strategies for diseases of melon caused by Fusarium spp.

Determination of low‐temperature stress during the vegetative stage as a tool to predict plant yield in rice genotypes with contrasting tolerance levels

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Abstract

In this study, the first aim was to develop a rapid and non-destructive method for analysing rice genotypes' tolerance to low temperatures (LT) during the seedling stage. Using a growth parameter and a physiological parameter, a discriminant formula was developed to differentiate between tolerant and sensitive genotypes based on their LT tolerance score. The study identified several benefits of the discriminant formula, including its low classification error rate, scalability, and ability to be used in controlled and reduced environments. Additionally, a second study was conducted, which found a strong correlation between the LT tolerance score during the seedling stage and plant yield at the ripening stage in plants grown under field LT during the vegetative stage. Panicle weight was the main mediator of the effect of the LT tolerance score on plant yield, but the number of panicles per plant also played a role. Overall, the results suggest that the LT tolerance score can serve as an indirect selection factor for plants for both LT tolerance and plant yield. This is especially relevant for rice-growing regions with temperate climates and LT at the beginning of the cultivation season.

Gene expression profiling of soaked dry beans (Phaseolus vulgaris L.) reveals cell wall modification plays a role in cooking time

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Abstract

Dry beans (Phaseolus vulgaris L.) are a nutritious food, but their lengthy cooking requirements are barriers to consumption. Presoaking is one strategy to reduce cooking time. Soaking allows hydration to occur prior to cooking, and enzymatic changes to pectic polysaccharides also occur during soaking that shorten the cooking time of beans. Little is known about how gene expression during soaking influences cooking times. The objectives of this study were to (1) identify gene expression patterns that are altered by soaking and (2) compare gene expression in fast-cooking and slow-cooking bean genotypes. RNA was extracted from four bean genotypes at five soaking time points (0, 3, 6, 12, and 18 h) and expression abundances were detected using Quant-seq. Differential gene expression analysis and weighted gene coexpression network analysis were used to identify candidate genes within quantitative trait loci for water uptake and cooking time. Genes related to cell wall growth and development as well as hypoxic stress were differentially expressed between the fast- and slow-cooking beans due to soaking. Candidate genes identified in the slow-cooking beans included enzymes that increase intracellular calcium concentrations and cell wall modification enzymes. The expression of cell wall-strengthening enzymes in the slow-cooking beans may increase their cooking time and ability to resist osmotic stress by preventing cell separation and water uptake in the cotyledon.