Effects of local density dependence and temperature on the spatial synchrony of marine fish populations

Effects of local density dependence and temperature on the spatial synchrony of marine fish populations

Disentangling the processes affecting spatial synchrony is challenging but essential to predict the effects of changing environmental conditions on populations. By studying spatial synchrony in density dynamics with and without accounting for the effects of temperature and density dependence, the authors show how temperature synchronizes while density dependence desynchronizes population dynamics.


Abstract

Disentangling empirically the many processes affecting spatial population synchrony is a challenge in population ecology. Two processes that could have major effects on the spatial synchrony of wild population dynamics are density dependence and variation in environmental conditions like temperature. Understanding these effects is crucial for predicting the effects of climate change on local and regional population dynamics. We quantified the direct contribution of local temperature and density dependence to spatial synchrony in the population dynamics of nine fish species inhabiting the Barents Sea. First, we estimated the degree to which the annual spatial autocorrelations in density are influenced by temperature. Second, we estimated and mapped the local effects of temperature and strength of density dependence on annual changes in density. Finally, we measured the relative effects of temperature and density dependence on the spatial synchrony in changes in density. Temperature influenced the annual spatial autocorrelation in density more in species with greater affinities to the benthos and to warmer waters. Temperature correlated positively with changes in density in the eastern Barents Sea for most species. Temperature had a weak synchronizing effect on density dynamics, while increasing strength of density dependence consistently desynchronised the dynamics. Quantifying the relative effects of different processes affecting population synchrony is important to better predict how population dynamics might change when environmental conditions change. Here, high degrees of spatial synchrony in the population dynamics remained unexplained by local temperature and density dependence, confirming the presence of additional synchronizing drivers, such as trophic interactions or harvesting.

Isolation and characterization of potential Lactobacillus acidophilus strains isolated from pig feces

Abstract

The aim of this study was to isolate and characterize Lactic Acid Bacteria (LAB) from 16 feces samples of pig farm, and to evaluate the probiotic potential of these isolates as potential oral probiotic candidates. The selection process was based on the isolation, identification, and a series of experiments for the selection of appropriate candidates with beneficial properties. The results demonstrated that most of LAB showed relatively strong resistance to pH 2.5 and high bile salts (1%), and had good survival in simulated gastric and intestinal juice. 9 isolates displayed antimicrobial activities against Bacillus cereus, Staphylococcus aureus, Listeria monocytogenes, Escherichia coli, Salmonella typhimurium, Pseudomonas aeruginosa and Enterobacter sakazakii. Almost all isolates were sensitive to ampicillin, chloramphenicol, vancomycin and amoxicillin, and most of isolates exhibited resistance against tetracycline and vancomycin. The adhesion rates of LAB varied greatly. The results of the study suggested that the Lactobacillus acidophilus NCUA065001 have the important functional property of probiotic candidates to enhance gut integrity and could considered to be the potential antibiotic alternatives in the pig feed industry.

Analysis of circRNA profiles and clinical value in Stevens‐Johnson syndrome and toxic epidermal necrolysis

Abstract

Severe cutaneous adverse drug reactions, including Stevens-Johnson syndrome (SJS) and toxic epidermal necrolysis (TEN), are challenging to be early diagnosed and evaluate their prognoses. This investigation aimed to analyse the expression profiles of SJS/TEN in peripheral blood mononuclear cells (PBMC) and assess the correlation between circular RNA (circRNA) and disease severity. Sixteen SJS/TEN patients and sixteen controls were enrolled and serum samples of both groups were obtained. CircRNA expression profiles in three SJS/TEN patients and three controls were detected by RNA sequencing and bioinformatic analyses were then performed. The differentially expressed circRNAs were verified by quantitative polymerase chain reaction (qPCR). Then, analysing the correlation of circRNAs with the toxic epidermal necrolysis-specific severity of illness score (SCORTEN) and the epidermal detachment area. A total of 134 circRNAs were differentially expressed in the PBMCs of SJS/TEN individuals, according to our results. The qPCR showed that three circRNAs (hsa_circ_0000711, hsa_circ_0083619 and hsa_circ_0005615) were down-regulated, and one circRNA (hsa_circ_0003028) was up-regulated, which were compatible with the sequencing findings. The concentration of hsa_circ_0083619 was closely associated with the SCORTEN scale (r = −0.581, p = 0.037) and the epidermal detachment area (r = −0.576, p = 0.039). The circRNA-miRNA-mRNA prediction network was used to construct the hsa_circ_0083619/miR-18a-5p/BCL2L10 axis. The hsa_circ_0083619 could serve as a disease severity indicator for SJS/TEN. Through bioinformatics analysis, we speculated that hsa_circ_0083619/miR-18a-5p/BCL2L10 axis might play a role in SJS/TEN pathogenesis.

Antioxidant activity of venison subjected to in vitro cooking and gastrointestinal digestion and isolation of its 2,2‐diphenyl‐1‐picrylhydrazyl radical scavenging peptides

Abstract

Venison, a type of game meat, has several health benefits because it contains not only high protein and low fat but also bioactive peptides with several physiological properties, including antioxidative and angiotensin-converting enzyme inhibitory properties. The aim of the present study was to investigate the antioxidant activity of venison treated by in vitro cooking and gastrointestinal digestion. We subjected venison along with pork and beef to in vitro cooking and digestion and assessed their antioxidant activity via 2,2-diphenyl-1-picrylhydrazyl radical scavenging (DPPH-RS) and hydrophilic oxygen radical absorbance capacity (H-ORAC) assays. The peptide contents of all types of cooked and digested meat samples were higher than those of the untreated and cooked samples. The DPPH-RS activities and H-ORAC of digested venison, pork, and beef were increased compared with those of untreated samples. DPPH-RS activity was significantly higher in the digested venison samples than in the digested pork and beef samples. In this study, several fractions of digested venison from the chromatography exhibited DPPH-RS activity. Peptide analysis, using liquid-chromatography with tandem mass spectrometry, unveiled two peptides DIDDLELTLAK and TQTVCNFTDGALVQHQEWDGK with high DPPH-RS activities. Thus, venison is a rich source of antioxidant peptides and potentially demonstrate an antioxidation ability by digestive enzymes in vivo.

Increase of ISG15 in psoriasis lesions and its promotion of keratinocyte proliferation via the Hif‐1α signalling pathway

Abstract

Psoriasis is a frequent chronic, recurrent and immune-mediated inflammatory skin disease, whose pathogenesis remains unclear at present. The role of antiviral protein in the pathogenesis of psoriasis is the focus of current research. Interferon stimulated gene 15 (ISG15) is an important antiviral protein. In this study, the expression of ISG15 saw a significant increase through the immunohistochemical detection of imiquimod (IMQ)-induced mice. In the psoriasis cell model, a remarkable increase also occurred in the expression of ISG15. In this study, it was found that the cell cycle was blocked in G1/S conversion, and a reduction took place in the proliferation of keratinocytes and the expression of a cell cycle-related protein—cyclin D1 after the knockout of ISG15 in the psoriasis cell model. After that, messenger ribonucleic acid (mRNA) sequencing and Gene Ontology/Kyoto Encyclopedia of Genes and Genomes (GO/KEGG) analysis indicated its close association with the hypoxia inducible factor-1α (HIF-1α) signalling pathway. Western blot showed a decrease in the expression of HIF-1α and vascular endothelial growth factor C (VEGFC) after the knockout of the ISG15 gene. The rescue experiment verified that ISG15 promotes the proliferation of keratinocytes by regulating the HIF-1α signalling pathway. It was concluded that psoriasis cells and mouse models witnessed the increased expression of ISG15. In psoriasis, knocking out ISG15 inhibits the proliferation of keratinocytes and blocks the cell cycle. Besides, ISG15 promotes the proliferation of keratinocytes through the HIF-1α signalling pathway.

Knockout of the BRAP homolog in mice leads to abnormal tracheal cilia

Knockout of the BRAP homolog in mice leads to abnormal tracheal cilia

Bombesin receptor-activated protein (BRAP) is a poorly characterized protein present in human bronchial epithelial cells. A gene knockout mouse lacking expression of the BRAP homolog exhibited abnormal tracheal cilia. Subsequent experiments revealed that BRAP may participate in the regulation of ciliogenesis by interacting with Rab-3A-interacting protein, which is implicated in cilia formation.


Both bombesin receptor-activated protein (BRAP) and its mouse homolog have been found to be expressed in bronchial epithelia but with unclear functions. Using electron microscopy combined with histological assays, we found that BRAP homolog deficiency in mice led to abnormal tracheal cilia. Rab-3A-interacting protein (Rabin8), a protein that might play a role in cilia development, was screened by yeast two-hybrid and further verified to have interaction with human BRAP by co-immunoprecipitation and pulldown assays. The expression levels of Rabin8, together with acetylated α-tubulin, a marker of cilia, were either downregulated by knockdown of BRAP or upregulated by overexpression of BRAP in cultured immortalized human bronchial epithelial cells. These results reveal a role for BRAP in airway cilia formation.

Assessing the sensitivity and resistance of communities in a changing environment

Assessing the sensitivity and resistance of communities in a changing environment

This paper provide concepts for quantitative and rapid assessment of resilience of communities in a changing environment.


Abstract

We propose that the ecological resilience of communities to permanent changes of the environment can be based on how variation in the overall abundance of individuals affects the number of species. Community sensitivity is defined as the ratio between the rate of change in the log expected number of species and the rate of change in the log expected number of individuals in the community. High community sensitivity means that small changes in the total abundance strongly impact the number of species. Community resistance is the proportional reduction in expected number of individuals that the community can sustain before expecting to lose one species. A small value of community resistance means that the community can only endure a small reduction in abundance before it is expected to lose one species. Based on long-term studies of four bird communities in European deciduous forests at different latitudes large differences were found in the resilience to environmental perturbations. Estimating the variance components of the species abundance distribution revealed how different processes contributed to the community sensitivity and resistance. Species heterogeneity in the population dynamics was the largest component, but its proportion varied among communities. Species-specific response to environmental fluctuations was the second major component of the variation in abundance. Estimates of community sensitivity and resistance based on data only from a single year were in general larger than those based on estimates from longer time series. Thus, our approach can provide rapid and conservative assessment of the resilience of communities to environmental changes also including only short-term data. This study shows that a general ecological mechanism, caused by increased strength of density dependence due to reduction in resource availability, can provide an intuitive measure of community resilience to environmental variation. Our analyses also illustrate the importance of including specific assumptions about how different processes affect community dynamics. For example, if stochastic fluctuations in the environment affect all species in a similar way, the sensitivity and resistance of the community to environmental changes will be different from communities in which all species show independent responses.

Nifuroxazide repurposing for protection from diabetes‐induced retinal injury in rats: Implication of oxidative stress and JAK/STAT3 axis

Nifuroxazide repurposing for protection from diabetes-induced retinal injury in rats: Implication of oxidative stress and JAK/STAT3 axis

Nifuroxazide (Nifu), the potent STAT3 inhibitor successfully protected the diabetic rats against diabetic retinopathy as it ameliorated the retinal structure deterioration. This effect could be attributed to modulating JAK/STAT3 axis and oxidative stress.


Abstract

The prevalence of diabetes mellitus (DM) is alarmingly increasing worldwide. Diabetic retinopathy (DR) is a prevailing DM microvascular complication, representing the major cause of blindness in working-age population. Inflammation is a crucial player in DR pathogenesis. JAK/STAT3 axis is a pleotropic cascade that modulates diverse inflammatory events. Nifuroxazide (Nifu) is a commonly used oral antibiotic with reported JAK/STAT3 inhibition activity. The present study investigated the potential protective effect of Nifu against diabetes-induced retinal injury. Effect of Nifu on oxidative stress, JAK/STAT3 axis and downstream inflammatory mediators has been also studied. Diabetes was induced in Sprague Dawley rats by single intraperitoneal injection of streptozotocin (50 mg/kg). Animals were assigned into four groups: normal, Nifu control, DM, and DM + Nifu. Nifu was orally administrated at 25 mg/kg/day for 8 weeks. The effects of Nifu on oxidative stress, JAK/STAT3 axis proteins, inflammatory factors, tight junction proteins, histological, and ultrastructural alterations were evaluated using spectrophotometry, gene and protein analyses, and histological studies. Nifu administration to diabetic rats attenuated histopathological and signs of retinal injury. Additionally, Nifu attenuated retinal oxidative stress, inhibited JAK and STAT3 phosphorylation, augmented the expression of STAT3 signaling inhibitor SOCS3, dampened the expression of transcription factor of inflammation NF-κB, and inflammatory cytokine TNF-α. Collectively, the current study indicated that Nifu alleviated DR progression in diabetic rats, suggesting beneficial retino-protective effect. This can be attributed to blocking JAK/STAT3 axis in retinal tissues with subsequent amelioration of oxidative stress and inflammation.

Reproductive performance of Peregrine falcons relative to the use of organochlorine pesticides, 1946–2021

Reproductive performance of Peregrine falcons relative to the use of organochlorine pesticides, 1946–2021

A chapter in the story of a Scottish Peregrine population can now be told in its entirety. Using a 75-year dataset, we show that the reproductive output of Peregrines in southern Scotland was greatly curtailed by organochlorine pesticides. After these chemicals were banned from agricultural use in the 1980s, Peregrine reproductive performance improved substantially and the population recovered. Photo credit: Peter Beasley.


Abstract

Populations of some fish- and meat-eating birds suffered dramatic declines globally following the introduction of organochlorine pesticides during the late 1940s and 1950s. It has been hypothesised that these population declines during the 1950s–1970s were largely driven by a combination of reproductive failure due to eggshell-thinning, egg breakage and embryonic death attributable to DDT and its metabolites, and to enhanced mortality attributable to the more toxic cyclodiene compounds such as aldrin and dieldrin. Using 75 years (1946–2021) of Peregrine falcon (Falco peregrinus) monitoring data (315 unique nest-sites monitored for 6110 nest-years), we studied the breeding performance of a resident Peregrine population in southern Scotland relative to the spatiotemporal pattern of organochlorine pesticide use. We show that (i) Peregrine breeding success and measures of breeding performance increased substantially following the reduction in, and subsequently a complete ban on, the use of organochlorine pesticides; (ii) improvements in Peregrine breeding performance were more dramatic in southeastern Scotland where agriculture was the predominant land use than in southwestern Scotland where there was less arable and more forested land; (iii) Peregrines nesting closer to the coast generally had higher fledging success (that is, a higher proportion of clutches that produced at least one fledgeling) than those nesting inland farther away from the coast; (iv) low temperatures and excessive rain in May negatively affected Peregrine fledging success; and (v) Peregrine abundance increased in parallel with improvements in reproductive performance following the reduction and then complete ban on the use of organochlorine pesticides in the UK. However, recovery was gradual and occurred over four decades, and rate of recovery varied among measures of reproductive performance (egg, nestling and fledgeling production). Our results suggest that the temporal pattern of organochlorine pesticide use strongly influenced Peregrine reproductive parameters but that the pattern of influence differed regionally. Overall results are consistent with the hypothesis that reproductive failure caused by organochlorine pesticides was an important driver of the decline in the south Scottish Peregrine population, and that improvements in all measures of breeding performance following a reduction and eventual ban on organochlorine use facilitated the observed increase in this population.

Abstrakt

Nachdem in den späten 1940er und 1950er Jahren chlororganische Pestizide eingeführt wurden, erlitten die Populationen einiger fisch- und fleischfressender Vögel weltweit einen dramatischen Rückgang. Es wurde die Hypothese formuliert, dass diese- Populationsrückgänge von den 1950er bis in die 1970er Jahre größtenteils auf eine Kombination aus einer reduzierten Fortpflanzungsleistung wegen des Einsatzes des Insektizids DDT mit seinen Metaboliten und den damit verbundenen negativen Auswirkungen (dünnschalige, zerbrechende Eier und Tod der Embryonen) sowie einer erhöhten Mortalität aufgrund der giftigeren Cyclodiene wie Aldrin und Dieldrin zurückzuführen waren. Anhand von Daten aus 75 Beobachtungsjahren (1946–2021) am Wanderfalken (Falco peregrinus) (315 Niststandorte wurden über 6.110 Nestjahre überwacht), untersuchten wir die Fortpflanzungsleistung einer in Südschottland beheimateten Wanderfalkenpopulation und wie sie sich in Relation mit einem zeitglichen Einsatz von chlororganischen Pestiziden entwickelt hat. Wir zeigen, dass: (i) der Bruterfolg des Wanderfalken nach der Reduzierung und dem anschließenden vollständigen Verbot von chlororganischen Pestiziden erheblich zunahm; (ii) der Bruterfolg des Wanderfalken im Südosten Schottlands stärker anstieg, wo Landwirtschaft die vorherrschende Landnutzung ist, als in Südwesten Schottlands, wo es weniger Agrargebiete und mehr Waldland gab; (iii) Wanderfalken die näher an der Küste nisteten eine höhere Produktivität (Anzahl flügger Jungvögel pro Brutversuch) aufwiesen als solche, die weiter von der Küste entfernt im Landesinneren nisteten; (iv) sich niedrige Temperaturen und überdurchschnittlich hohe Regenfälle im Mai negativ auf den Fortpflanzungserfolg auswirkten, und (v) die Anzahl der Wanderfalken in Südschottland, parallel zu einer Verbesserungen der Fortpflanzungsleistung nach Reduktion bzw. vollständigem Verbot des Einsatzes von chlororganischen Pestiziden im Vereinigten Königreich, zunahm. Diese Erholung verlief jedoch schrittweise und erfolgte über einen Zeitraum von vier Jahrzehnten, wobei die Erholungsrate je nach Maß für die Reproduktionsleistung (i.e. Anzahl der Eier, Bruterfolg, Produktivität) unterschiedlich ausfiel. Unsere Ergebnisse deuten darauf hin, dass der Einsatz von chlororganischen Pestiziden die Reproduktionsparameter der Wanderfalken im Untersuchungsraum stark beeinflusste, die Stärke des Einflusses jedoch regional unterschiedlich war. Die Gesamtergebnisse stimmen mit der Hypothese überein, dass eine durch chlororganische Pestizide verursachte reduzierte Reproduktionsleistung ein wichtiger Faktor für den Rückgang der südschottischen Wanderfalkenpopulation war. Die Verbesserung aller brutbiologischen Kennziffern und der starke Anstieg der Wanderfalken-Population in Südschottland ging mit einer Reduzierung bzw. mit dem gänzlichen Verbot des Einsatzes von chlororganischen Pestiziden einher.

Omnivore diet composition alters parasite resistance and host condition

Omnivore diet composition alters parasite resistance and host condition

Broader diet breadths enable omnivores to mount dynamic responses feeding to parasite attack, but little is known about how plant/prey mixing might influence responses to infection. These results suggest that a diverse nutritional landscape may be key in enabling omnivores' resistance and resilience to immune stressors in their environments.


Abstract

Diet composition modulates animals' ability to resist parasites and recover from stress. Broader diet breadths enable omnivores to mount dynamic responses to parasite attack, but little is known about how plant/prey mixing might influence responses to infection. Using omnivorous deer mice (Peromyscus maniculatus) as a model, we examine how varying plant and prey concentrations in blended diets influence resistance and body condition following infestation by Rocky Mountain wood ticks (Dermacentor andersoni). In two repeated experiments, deer mice fed for 4 weeks on controlled diets that varied in proportions of seeds and insects were then challenged with 50 tick larvae in two sequential infestations. The numbers of ticks successfully feeding on mice declined by 25% and 66% after the first infestation (in the first and second experiments, respectively), reflecting a pattern of acquired resistance, and resistance was strongest when plant/prey ratios were more equally balanced in mouse diets, relative to seed-dominated diets. Diet also dramatically impacted the capacity of mice to cope with tick infestations. Mice fed insect-rich diets lost 15% of their body weight when parasitized by ticks, while mice fed seed-rich diets lost no weight at all. While mounting/maintaining an immune response may be energetically demanding, mice may compensate for parasitism with fat and carbohydrate-rich diets. Altogether, these results suggest that a diverse nutritional landscape may be key in enabling omnivores' resistance and resilience to infection and immune stressors in their environments.